PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV39602.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ARF
Protein Properties Length: 1039aa    MW: 115195 Da    PI: 6.4519
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV39602.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.5e-24265366199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae+       ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD v+F   ++++ +l+
  KZV39602.1 265 FCKILTASDTSTHGGFSVPRRAAEKLfpqldySMQPPT-QELIVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDAVLFI--RDEKSQLL 360
                 99*********************999*****9555554.49************************************************..45677789 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++v+r+
  KZV39602.1 361 LGVRRA 366
                 999997 PP

2Auxin_resp117.31.3e-38391474183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aaha +++s F+++YnPra++seF+++++k++kal+ +++svGmRf m+fete+ss+rr++Gt+vg+sdldp+rWpnSkWrsL+
  KZV39602.1 391 AAHASANRSSFSIFYNPRACPSEFIIPLAKYRKALYgTQLSVGMRFGMMFETEESSKRRYMGTIVGISDLDPLRWPNSKWRSLQ 474
                 799*********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.36E-47252394IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-41257379IPR015300DNA-binding pseudobarrel domain
CDDcd100179.80E-22264365No hitNo description
PROSITE profilePS5086313.225265367IPR003340B3 DNA binding domain
SMARTSM010191.8E-22265367IPR003340B3 DNA binding domain
PfamPF023622.5E-21265366IPR003340B3 DNA binding domain
PfamPF065072.1E-33391474IPR010525Auxin response factor
PfamPF023095.8E-109171007IPR033389AUX/IAA domain
PROSITE profilePS5174526.4479211004IPR000270PB1 domain
SuperFamilySSF542771.28E-9934999No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1039 aa     Download sequence    Send to blast
MPPKRSRAQG MGETSHMQSL SQGSENPSLT AEQIAQLVAA TVEQILANRT ESCLPPNQKA  60
EEIKKLQEEV ARHLTLPRDP LPPCPLNVEE PAHPPFVGAR VPPDESKVPL VGKFGLIGQH  120
GFPSFWTRRD TIKRLGRATY YAIARVGRSK NLLSVRKPIS SELWHACAGP LVTLPQIGSL  180
VYYLPQGHSE QVAVSTNRAA TSQIPNYPNL PSQLLCQVHN VTLHADKDTD EIYAQMNLQP  240
VSSEKDVFSV PDFGVRPSKH PTEFFCKILT ASDTSTHGGF SVPRRAAEKL FPQLDYSMQP  300
PTQELIVRDL HDNTWTFRHI YRGQPKRHLL TTGWSMFVGA KRLRAGDAVL FIRDEKSQLL  360
LGVRRANRQQ TTLPSSVLSA DSMHIGILAA AAHASANRSS FSIFYNPRAC PSEFIIPLAK  420
YRKALYGTQL SVGMRFGMMF ETEESSKRRY MGTIVGISDL DPLRWPNSKW RSLQVEWDEP  480
GCGDKPNRVS PWEVETPESI LIFPSLTANL KRPFHSAVVG VQPEWGDMLT CRPFLRVPDI  540
SPGDLQCPSI SSFWPEQLMK IKPHGLVTPL DNTPHMQDFS VKDVFQEAKS LIHPAIRKPE  600
STPPENVFPQ GYSHPQSVVT QQNIANYSIL VPGKPLSPKK LGNQTLGAGS ELSKLEPIPA  660
MDQLTSQTAV NDVMVANQIN GTLDSQTSLW TTNSRGEIDP SQVIESASAN TYLQYLGQVE  720
CDPISQSQHH AGSFRSLGPL STFEKSELHA TLSKTSYPMQ YSVDQNLWDS HFNEVKAISH  780
AQLPVLLPRQ CMPNLQYSIG GLKDISDESH NQSDIYSCLN IDGSNSGSTI IDPSVSSTLL  840
DDFCILKNAD FQNPSDYLVN NFCRNQDIQS QITTASLADS QNVTLQEYAD NSGGASSSNV  900
DFEDTNLLQH GSWQQVTTRF RTYTKIQKAG SVGRSIDVSS FKNYDELRSE IEQMFSLKGL  960
LNDSSSGWKL VYVDFENDVL LVGDDPWEEF VGCVKCIRIL SPSEVQQMGD EGMQLLNSAG  1020
VQGASALTYD TRCHKDGSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.015049941392Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083507.10.0PREDICTED: auxin response factor 5
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLA0A068UFS90.0A0A068UFS9_COFCA; Auxin response factor
STRINGSolyc04g081240.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58592334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein